Tools to analyze PKS specificities¶
Minowa // NRPS/PKS specificity prediction according to Minowa et al.¶
please see Minowa et al. entry in NRPS specificty predictor section.
NRPS/PKS substrate predictor¶
NRPS/PKS substrate predictor uses a HMM-based approach to predict specificities of NRPS A-domains and PKS AT domains.
PKSIIIexplorer uses and transductive SVM-approach to identify PKSIII enzymes in datasets Reference:
- http://type3pks.in/tsvm/pks3 (currently service is not available)
Specificity prediction for Type I PKS¶
Specificity predictions are included in multiple domain identification tools. Please follow the link below.